4HP2 image
Entry Detail
PDB ID:
4HP2
Keywords:
Title:
Invariom refinement of a new dimeric monoclinic 2 solvate of thiostrepton at 0.64 angstrom resolution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2012-10-23
Release Date:
2013-10-02
Method Details:
Experimental Method:
Resolution:
0.64 Å
R-Value Work:
0.06
R-Value Observed:
0.06
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thiostrepton
Chain IDs:A, B
Chain Length:19
Number of Molecules:2
Biological Source:Streptomyces azureus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
BB9 A CYS ?
DBU A THR (2Z)-2-AMINOBUT-2-ENOIC ACID
DHA A SER 2-AMINO-ACRYLIC ACID
MH6 A SER 3-HYDROXY-2-IMINOPROPANOIC ACID
TS9 A ILE ?
Peptide-like Molecules
PRD_000223
Primary Citation
Invariom refinement of a new monoclinic solvate of thiostrepton at 0.64 angstrom resolution.
Acta Crystallogr.,Sect.D 69 1530 1539 (2013)
PMID: 23897476 DOI: 10.1107/S0907444913010664

Abstact

A new monoclinic solvate containing two molecules of the thiopeptide antibiotic thiostrepton in the asymmetric unit has been crystallized in space group P2(1). Single-crystal diffraction data to a resolution of 0.64 Å were collected at the SLS synchrotron, allowing structure solution by direct methods and resolution of the disorder present. Valence electron density can be observed in the Fourier residual density from refinement with the independent-atom model, which is a prerequisite for successful application of more sophisticated aspherical-atom scattering factors such as the invariom model when aiming to improve the structural model. Invariom refinement improves quality indicators such as R1(F) for thiostrepton, as previously demonstrated for small molecules. The nonspherical electron-density model also allows the direct derivation of a dipole moment and an electrostatic potential for the whole molecule, which is discussed in the context of antibiotic activity and molecular recognition.

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