4HP1 image
Deposition Date 2012-10-23
Release Date 2012-12-05
Last Version Date 2024-04-03
Entry Detail
PDB ID:
4HP1
Title:
Crystal structure of Tet3 in complex with a non-CpG dsDNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LOC100036628 protein
Gene (Uniprot):tet3
Chain IDs:C
Chain Length:72
Number of Molecules:1
Biological Source:Xenopus (Silurana) tropicalis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
5CM A DC ?
Ligand Molecules
Primary Citation
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development.
Cell(Cambridge,Mass.) 151 1200 1213 (2012)
PMID: 23217707 DOI: 10.1016/j.cell.2012.11.014

Abstact

Ten-Eleven Translocation (Tet) family of dioxygenases dynamically regulates DNA methylation and has been implicated in cell lineage differentiation and oncogenesis. Yet their functions and mechanisms of action in gene regulation and embryonic development are largely unknown. Here, we report that Xenopus Tet3 plays an essential role in early eye and neural development by directly regulating a set of key developmental genes. Tet3 is an active 5mC hydroxylase regulating the 5mC/5hmC status at target gene promoters. Biochemical and structural studies further demonstrate that the Tet3 CXXC domain is critical for specific Tet3 targeting. Finally, we show that the enzymatic activity and CXXC domain are both crucial for Tet3's biological function. Together, these findings define Tet3 as a transcription regulator and reveal a molecular mechanism by which the 5mC hydroxylase and DNA binding activities of Tet3 cooperate to control target gene expression and embryonic development.

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Primary Citation of related structures