4HHL image
Deposition Date 2012-10-10
Release Date 2013-03-27
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4HHL
Keywords:
Title:
High resolution crystal structure of Glucose Isomerase from Streptomyces sp. SK
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.73 Å
R-Value Free:
0.18
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Xylose isomerase
Gene (Uniprot):xylA
Chain IDs:A, B
Chain Length:388
Number of Molecules:2
Biological Source:Streptomyces sp. SK
Primary Citation
Identification of critical residues for the activity and thermostability of Streptomyces sp. SK glucose isomerase.
Appl.Microbiol.Biotechnol. 97 9715 9726 (2013)
PMID: 23463249 DOI: 10.1007/s00253-013-4784-2

Abstact

The role of residue 219 in the physicochemical properties of D-glucose isomerase from Streptomyces sp. SK strain (SKGI) was investigated by site-directed mutagenesis and structural studies. Mutants G219A, G219N, and G219F were generated and characterized. Comparative studies of their physicochemical properties with those of the wild-type enzyme highlighted that mutant G219A displayed increased specific activity and thermal stability compared to that of the wild-type enzyme, while for G219N and G219F, these properties were considerably decreased. A double mutant, SKGI F53L/G219A, displayed a higher optimal temperature and a higher catalytic efficiency than both the G219A mutant and the wild-type enzyme and showed a half-life time of about 150 min at 85 °C as compared to 50 min for wild-type SKGI. Crystal structures of SKGI wild-type and G219A enzymes were solved to 1.73 and 2.15 Å, respectively, and showed that the polypeptide chain folds into two structural domains. The larger domain consists of a (β/α)8 unit, and the smaller domain forms a loop of α helices. Detailed analyses of the three-dimensional structures highlighted minor but important changes in the active site region as compared to that of the wild-type enzyme leading to a displacement of both metal ions, and in particular that in site M2. The structural analyses moreover revealed how the substitution of G219 by an alanine plays a crucial role in improving the thermostability of the mutant enzyme.

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