4HAN image
Deposition Date 2012-09-27
Release Date 2013-03-20
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4HAN
Title:
Crystal structure of Galectin 8 with NDP52 peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31 1 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Galectin-8
Gene (Uniprot):LGALS8
Chain IDs:A, B
Chain Length:293
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calcium-binding and coiled-coil domain-containing protein 2
Gene (Uniprot):CALCOCO2
Chain IDs:C, D
Chain Length:14
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8.
Nat Commun 4 1613 1613 (2013)
PMID: 23511477 DOI: 10.1038/ncomms2606

Abstact

Infectious bacteria are cleared from mammalian cells by host autophagy in combination with other upstream cellular components, such as the autophagic receptor NDP52 and sugar receptor galectin-8. However, the detailed molecular basis of the interaction between these two receptors remains to be elucidated. Here, we report the biochemical characterization of both NDP52 and galectin-8 as well as the crystal structure of galectin-8 complexed with an NDP52 peptide. The unexpected observation of nicotinamide adenine dinucleotide located at the carbohydrate-binding site expands our knowledge of the sugar-binding specificity of galectin-8. The NDP52-galectin-8 complex structure explains the key determinants for recognition on both receptors and defines a special orientation of N- and C-terminal carbohydrate recognition domains of galectin-8. Dimeric NDP52 forms a ternary complex with two monomeric galectin-8 molecules as well as two LC3C molecules. These results lay the groundwork for understanding how host cells target bacterial pathogens for autophagy.

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