4H2L image
Deposition Date 2012-09-12
Release Date 2013-04-10
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4H2L
Title:
Deer mouse hemoglobin in hydrated format
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-globin
Gene (Uniprot):HBA
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Peromyscus maniculatus
Polymer Type:polypeptide(L)
Molecule:Beta globin
Gene (Uniprot):HBB-T1
Chain IDs:B
Chain Length:146
Number of Molecules:1
Biological Source:Peromyscus maniculatus
Ligand Molecules
Primary Citation
Deer mouse hemoglobin exhibits a lowered oxygen affinity owing to mobility of the E helix.
Acta Crystallogr.,Sect.F 69 393 398 (2013)
PMID: 23545644 DOI: 10.1107/S1744309113005708

Abstact

The deer mouse, Peromyscus maniculatus, exhibits altitude-associated variation in hemoglobin oxygen affinity. To examine the structural basis of this functional variation, the structure of the hemoglobin was solved. Recombinant hemoglobin was expressed in Escherichia coli and was purified by ion-exchange chromatography. Recombinant hemoglobin was crystallized by the hanging-drop vapor-diffusion method using polyethylene glycol as a precipitant. The obtained orthorhombic crystal contained two subunits in the asymmetric unit. The refined structure was interpreted as the aquo-met form. Structural comparisons were performed among hemoglobins from deer mouse, house mouse and human. In contrast to human hemoglobin, deer mouse hemoglobin lacks the hydrogen bond between α1Trp14 in the A helix and α1Thr67 in the E helix owing to the Thr67Ala substitution. In addition, deer mouse hemoglobin has a unique hydrogen bond at the α1β1 interface between residues α1Cys34 and β1Ser128.

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Primary Citation of related structures