4H0Y image
Entry Detail
PDB ID:
4H0Y
Title:
Crystal structure of NAD+-Ia(E380S)-actin complex
Biological Source:
PDB Version:
Deposition Date:
2012-09-10
Release Date:
2013-02-20
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Iota toxin component Ia
Mutations:E380S
Chain IDs:A
Chain Length:418
Number of Molecules:1
Biological Source:Clostridium perfringens
Polymer Type:polypeptide(L)
Description:Actin, alpha skeletal muscle
Chain IDs:B
Chain Length:375
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Primary Citation
Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
Proc.Natl.Acad.Sci.USA 110 4267 4272 (2013)
PMID: 23382240 DOI: 10.1073/pnas.1217227110

Abstact

Clostridium perfringens iota-toxin (Ia) mono-ADP ribosylates Arg177 of actin, leading to cytoskeletal disorganization and cell death. To fully understand the reaction mechanism of arginine-specific mono-ADP ribosyl transferase, the structure of the toxin-substrate protein complex must be characterized. Recently, we solved the crystal structure of Ia in complex with actin and the nonhydrolyzable NAD(+) analog βTAD (thiazole-4-carboxamide adenine dinucleotide); however, the structures of the NAD(+)-bound form (NAD(+)-Ia-actin) and the ADP ribosylated form [Ia-ADP ribosylated (ADPR)-actin] remain unclear. Accidentally, we found that ethylene glycol as cryo-protectant inhibits ADP ribosylation and crystallized the NAD(+)-Ia-actin complex. Here we report high-resolution structures of NAD(+)-Ia-actin and Ia-ADPR-actin obtained by soaking apo-Ia-actin crystal with NAD(+) under different conditions. The structures of NAD(+)-Ia-actin and Ia-ADPR-actin represent the pre- and postreaction states, respectively. By assigning the βTAD-Ia-actin structure to the transition state, the strain-alleviation model of ADP ribosylation, which we proposed previously, is experimentally confirmed and improved. Moreover, this reaction mechanism appears to be applicable not only to Ia but also to other ADP ribosyltransferases.

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