4GYY image
Deposition Date 2012-09-05
Release Date 2012-10-31
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4GYY
Title:
Crystal structure of human O-GlcNAc Transferase with UDP-5SGlcNAc and a peptide substrate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Gene (Uniprot):OGT
Chain IDs:A, C
Chain Length:723
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Casein kinase II subunit alpha
Gene (Uniprot):CSNK2A1
Chain IDs:B, D
Chain Length:14
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural snapshots of the reaction coordinate for O-GlcNAc transferase.
Nat.Chem.Biol. 8 966 968 (2012)
PMID: 23103939 DOI: 10.1038/nchembio.1109

Abstact

Visualization of the reaction coordinate undertaken by glycosyltransferases has remained elusive but is critical for understanding this important class of enzyme. Using substrates and substrate mimics, we describe structural snapshots of all species along the kinetic pathway for human O-linked β-N-acetylglucosamine transferase (O-GlcNAc transferase), an intracellular enzyme that catalyzes installation of a dynamic post-translational modification. The structures reveal key features of the mechanism and show that substrate participation is important during catalysis.

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Primary Citation of related structures