4GW2 image
Entry Detail
PDB ID:
4GW2
Keywords:
Title:
Crystal structure of arginine kinase in complex with L-ornithine, MgADP, and nitrate.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-08-31
Release Date:
2012-10-03
Method Details:
Experimental Method:
Resolution:
2.16 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Arginine kinase
Mutations:E103N, D112G, G116A
Chain IDs:A
Chain Length:357
Number of Molecules:1
Biological Source:Limulus polyphemus
Primary Citation
Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
Biochem.Biophys.Res.Commun. 427 212 217 (2012)
PMID: 22995310 DOI: 10.1016/j.bbrc.2012.09.053

Abstact

Arginine kinase catalyzes the reversible transfer of a phosphoryl group between ATP and l-arginine and is a monomeric homolog of the human enzyme creatine kinase. Arginine and creatine kinases belongs to the phosphagen kinase family of enzymes, which consists of eight known members, each of which is specific for its own phosphagen. Here, the source of phosphagen specificity in arginine kinase is investigated through the use of phosphagen analogs. Crystal structures have been determined for Limulus polyphemus arginine kinase with one of four arginine analogs bound in a transition state analog complex: l-ornithine, l-citrulline, imino-l-ornithine, and d-arginine. In all complexes, the enzyme achieves a closed conformation very similar to that of the cognate transition state analog complex, but differences are observed in the configurations of bound ligands. Arginine kinase exhibits no detectable activity towards ornithine, citrulline, or imino-l-ornithine, and only trace activity towards d-arginine. The crystal structures presented here demonstrate that phosphagen specificity is derived neither from a lock-and-key mechanism nor a modulation of induced-fit conformational changes, but potentially from subtle distortions in bound substrate configurations.

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