4GT5 image
Deposition Date 2012-08-28
Release Date 2012-09-26
Last Version Date 2023-09-13
Entry Detail
PDB ID:
4GT5
Keywords:
Title:
Crystal structure of the inactive TrkA kinase domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:High affinity nerve growth factor receptor
Gene (Uniprot):NTRK1
Chain IDs:A
Chain Length:306
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Assessing the range of kinase autoinhibition mechanisms in the insulin receptor family.
Biochem.J. 448 213 220 (2012)
PMID: 22992069 DOI: 10.1042/BJ20121365

Abstact

To investigate the range of autoinhibitory mechanisms used by TKDs (tyrosine kinase domains) from the insulin receptor family of RTKs (receptor tyrosine kinases), we determined crystal structures of TKDs from TrkA (tropomyosin receptor kinase A, a nerve growth factor receptor) and Ror2 (receptor tyrosine kinase-like orphan receptor 2, an unconventional Wnt receptor). TrkA autoinhibition closely resembles that seen for the insulin receptor, relying on projection of an activation loop tyrosine residue into the substrate-binding site and occlusion of the ATP-binding site by the activation loop. Ror2 employs similar mechanisms, but the unusual replacement of the phenylalanine residue in its Asp-Phe-Gly motif with leucine necessitates occlusion of the ATP-binding site by other means. The unusual Asp-Leu-Gly motif in Ror2 is displaced compared with other inactive kinases, allowing the activation loop to interact directly with the TKD's αC helix, in another mode of autoinhibition that is characteristic of the other extreme of this receptor family: ALK (anaplastic lymphoma kinase) and Met. These findings provide insight into the expected range of activating mutations in these TKDs in cancer. We also describe symmetrical dimers of the inactive TrkA TKD resembling those found in other RTKs, possibly reflecting an arrangement of kinase domains in a pre-formed TrkA dimer.

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Primary Citation of related structures