4GSO image
Deposition Date 2012-08-28
Release Date 2012-12-12
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4GSO
Keywords:
Title:
structure of Jararacussin-I
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thrombin-like enzyme BjussuSP-1
Chain IDs:A
Chain Length:232
Number of Molecules:1
Biological Source:Bothrops jararacussu
Primary Citation
Crystal structure of Jararacussin-I: The highly negatively charged catalytic interface contributes to macromolecular selectivity in snake venom thrombin-like enzymes.
Protein Sci. 22 128 132 (2013)
PMID: 23139169 DOI: 10.1002/pro.2189

Abstact

Snake venom serine proteinases (SVSPs) are hemostatically active toxins that perturb the maintenance and regulation of both the blood coagulation cascade and fibrinolytic feedback system at specific points, and hence, are widely used as tools in pharmacological and clinical diagnosis. The crystal structure of a thrombin-like enzyme (TLE) from Bothrops jararacussu venom (Jararacussin-I) was determined at 2.48 Å resolution. This is the first crystal structure of a TLE and allows structural comparisons with both the Agkistrodon contortrix contortrix Protein C Activator and the Trimeresurus stejnegeri plasminogen activator. Despite the highly conserved overall fold, significant differences in the amino acid compositions and three-dimensional conformations of the loops surrounding the active site significantly alter the molecular topography and charge distribution profile of the catalytic interface. In contrast to other SVSPs, the catalytic interface of Jararacussin-I is highly negatively charged, which contributes to its unique macromolecular selectivity.

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