ISDA

Deposition Date 2012-08-27

Release Date 2013-08-28

Last Version Date 2023-09-13

Entry Detail

PDB ID:

4GS8

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

Structure analysis of cysteine free insulin degrading enzyme (ide) with compound bdm43079 [{[(s)-2-(1h-imidazol-4-yl)-1-methylcarbamoyl-ethylcarbamoyl]-methyl}-(3-phenyl-propyl)-amino]-acetic acid

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

ESCHERICHIA COLI

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.99 Å

R-Value Free:

0.23

R-Value Work:

0.17

R-Value Observed:

0.18

Space Group:

P 65

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Insulin-degrading enzyme
Gene (Uniprot):IDE
Mutations:C110L,E111Q,C171S,C178A,C257V,C414L,C573N,C590S,C789SC812A,C819A,C904S,C966N,C974A
Chain IDs:A, B
Chain Length:990
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P14735 Pfam ID:PF00675, PF05193, PF16187 EC:3.4.24.56

Ligand Molecules

MGJ

Primary Citation

Imidazole-derived 2-[N-carbamoylmethyl-alkylamino]acetic acids, substrate-dependent modulators of insulin-degrading enzyme in amyloid-beta hydrolysis.

Charton, J, Gauriot, M, Guo, Q, Hennuyer, N, Marechal, X, Dumont, J, Hamdane, M, Pottiez, V, Landry, V, Sperandio, O, Flipo, M, Buee, L, Staels, B, Leroux, F, Tang, W.J, Deprez, B, Deprez-Poulain, R.Show

Eur.J.Med.Chem. 79 184 193 (2014)

PMID: 24735644 DOI: 10.1016/j.ejmech.2014.04.009

Abstact

Insulin degrading enzyme (IDE) is a highly conserved zinc metalloprotease that is involved in the clearance of various physiologically peptides like amyloid-beta and insulin. This enzyme has been involved in the physiopathology of diabetes and Alzheimer's disease. We describe here a series of small molecules discovered by screening. Co-crystallization of the compounds with IDE revealed a binding both at the permanent exosite and at the discontinuous, conformational catalytic site. Preliminary structure-activity relationships are described. Selective inhibition of amyloid-beta degradation over insulin hydrolysis was possible. Neuroblastoma cells treated with the optimized compound display a dose-dependent increase in amyloid-beta levels.

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Primary Citation of related structures