4GQ7 image
Deposition Date 2012-08-22
Release Date 2013-01-16
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4GQ7
Title:
Crystal structure of Lg-Flo1p
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.53 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Flocculin
Gene (Uniprot):Lg-FLO1
Chain IDs:A
Chain Length:224
Number of Molecules:1
Biological Source:Saccharomyces pastorianus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Structural and biochemical characterization of the N-terminal domain of flocculin Lg-Flo1p from Saccharomyces pastorianus reveals a unique specificity for phosphorylated mannose.
Febs J. 280 1073 1083 (2013)
PMID: 23281814 DOI: 10.1111/febs.12102

Abstact

UNLABELLED The mechanism of yeast flocculation is generally considered to be mediated through the interaction of cell surface flocculins and mannan carbohydrates. In the present study, the crystal structure of the soluble 25-kDa lectin domain of flocculin 1 from brewer's yeast (Lg-Flo1p) was resolved to 2.5 Å, and its binding specificity towards oligosaccharides was investigated by fluorescence spectroscopy. Lg-Flo1p displays broad specificity towards sugars and has a 14-fold higher affinity for mannose 1-phosphate and glucose 1-phosphate compared to their unphosphorylated counterparts. Based on the results of a structural analysis, we propose that this higher affinity is the result of a charge interaction with a lysine residue in a carbohydrate-binding loop region, NAKAL, unique to NewFlo type flocculins. This raises the possibility of a unique mechanism of flocculation in NewFlo type yeast, which recognizes phosphorylated cell surface mannans. DATABASE Structural data have been deposited in the Protein Data Bank under accession number 4GQ7.

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