4GMS image
Entry Detail
PDB ID:
4GMS
Title:
Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2012-08-16
Release Date:
2012-10-03
Method Details:
Experimental Method:
Resolution:
2.95 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hemagglutinin HA1 chain
Chain IDs:A, C, E
Chain Length:320
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Description:Hemagglutinin HA2 chain
Chain IDs:B, D, F
Chain Length:176
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Description:Fab S139/1 heavy chain
Chain IDs:H, J (auth: I), L (auth: J)
Chain Length:225
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab S139/1 light chain
Chain IDs:G (auth: L), I (auth: M), K (auth: N)
Chain Length:214
Number of Molecules:3
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN H ASN GLYCOSYLATION SITE
PCA H GLN PYROGLUTAMIC ACID
Primary Citation
Heterosubtypic antibody recognition of the influenza virus hemagglutinin receptor binding site enhanced by avidity.
Proc.Natl.Acad.Sci.USA 109 17040 17045 (2012)
PMID: 23027945 DOI: 10.1073/pnas.1212371109

Abstact

Continual and rapid mutation of seasonal influenza viruses by antigenic drift necessitates the almost annual reformulation of flu vaccines, which may offer little protection if the match to the dominant circulating strain is poor. S139/1 is a cross-reactive antibody that neutralizes multiple HA strains and subtypes, including those from H1N1 and H3N2 viruses that currently infect humans. The crystal structure of the S139/1 Fab in complex with the HA from the A/Victoria/3/1975 (H3N2) virus reveals that the antibody targets highly conserved residues in the receptor binding site and contacts antigenic sites A, B, and D. Binding and plaque reduction assays show that the monovalent Fab alone can protect against H3 strains, but the enhanced avidity from binding of bivalent IgG increases the breadth of neutralization to additional strains from the H1, H2, H13, and H16 subtypes. Thus, antibodies making relatively low affinity Fab interactions with the receptor binding site can have significant antiviral activity when enhanced by avidity through bivalent interactions of the IgG, thereby extending the breadth of binding and neutralization to highly divergent influenza virus strains and subtypes.

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