4GMK image
Entry Detail
PDB ID:
4GMK
Keywords:
Title:
Crystal Structure of Ribose 5-Phosphate Isomerase from the Probiotic Bacterium Lactobacillus salivarius UCC118
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-08-16
Release Date:
2012-08-29
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ribose-5-phosphate isomerase A
Chain IDs:A, B
Chain Length:228
Number of Molecules:2
Biological Source:Lactobacillus salivarius
Primary Citation
Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118.
Acta Crystallogr.,Sect.F 68 1427 1433 (2012)
PMID: 23192019 DOI: 10.1107/S174430911204273X

Abstact

The structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC188 has been determined at 1.72 Å resolution. The structure was solved by molecular replacement, which identified the functional homodimer in the asymmetric unit. Despite only showing 57% sequence identity to its closest homologue, the structure adopted the typical α and β D-ribose 5-phosphate isomerase fold. Comparison to other related structures revealed high homology in the active site, allowing a model of the substrate-bound protein to be proposed. The determination of the structure was expedited by the use of in situ crystallization-plate screening on beamline I04-1 at Diamond Light Source to identify well diffracting protein crystals prior to routine cryocrystallography.

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