4GG6 image
Entry Detail
PDB ID:
4GG6
Keywords:
Title:
Protein complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2012-08-06
Release Date:
2012-10-24
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DQ alpha 1 chain
Chain IDs:A, C
Chain Length:192
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DQ beta 1 chain
Chain IDs:B, D
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-CELL RECEPTOR, SP3.4 ALPHA CHAIN
Mutations:T176C
Chain IDs:E, G
Chain Length:207
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-CELL RECEPTOR, SP3.4 BETA CHAIN
Mutations:C202A, S184C
Chain IDs:F, H
Chain Length:245
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Peptide from Alpha/beta-gliadin MM1
Mutations:Q3E, Q11E
Chain IDs:I, J
Chain Length:18
Number of Molecules:2
Biological Source:Triticum aestivum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN C ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Biased T cell receptor usage directed against human leukocyte antigen DQ8-restricted gliadin peptides is associated with celiac disease.
Immunity 37 611 621 (2012)
PMID: 23063329 DOI: 10.1016/j.immuni.2012.07.013

Abstact

Celiac disease is a human leukocyte antigen (HLA)-DQ2- and/or DQ8-associated T cell-mediated disorder that is induced by dietary gluten. Although it is established how gluten peptides bind HLA-DQ8 and HLA-DQ2, it is unclear how such peptide-HLA complexes are engaged by the T cell receptor (TCR), a recognition event that triggers disease pathology. We show that biased TCR usage (TRBV9(∗)01) underpins the recognition of HLA-DQ8-α-I-gliadin. The structure of a prototypical TRBV9(∗)01-TCR-HLA-DQ8-α-I-gliadin complex shows that the TCR docks centrally above HLA-DQ8-α-I-gliadin, in which all complementarity-determining region-β (CDRβ) loops interact with the gliadin peptide. Mutagenesis at the TRBV9(∗)01-TCR-HLA-DQ8-α-I-gliadin interface provides an energetic basis for the Vβ bias. Moreover, CDR3 diversity accounts for TRBV9(∗)01(+) TCRs exhibiting differing reactivities toward the gliadin epitopes at various deamidation states. Accordingly, biased TCR usage is an important factor in the pathogenesis of DQ8-mediated celiac disease.

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Protein

Chemical

Disease

Primary Citation of related structures