4GC2 image
Deposition Date 2012-07-29
Release Date 2013-04-10
Last Version Date 2023-09-13
Entry Detail
PDB ID:
4GC2
Title:
Crystal structure of the bacteriocin LLPA from pseudomonas sp. in complex with GlcNAc beta(1-2)Man alpha(1-3)[GlcNAc beta(1-2)Man alpha(1-6)]Man
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putidacin L1
Gene (Uniprot):llpA
Chain IDs:A, B
Chain Length:276
Number of Molecules:2
Biological Source:Pseudomonas sp. BW11M1
Primary Citation
Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA.
Plos Pathog. 9 e1003199 e1003199 (2013)
PMID: 23468636 DOI: 10.1371/journal.ppat.1003199

Abstact

Lectin-like bacteriotoxic proteins, identified in several plant-associated bacteria, are able to selectively kill closely related species, including several phytopathogens, such as Pseudomonas syringae and Xanthomonas species, but so far their mode of action remains unrevealed. The crystal structure of LlpABW, the prototype lectin-like bacteriocin from Pseudomonas putida, reveals an architecture of two monocot mannose-binding lectin (MMBL) domains and a C-terminal β-hairpin extension. The C-terminal MMBL domain (C-domain) adopts a fold very similar to MMBL domains from plant lectins and contains a binding site for mannose and oligomannosides. Mutational analysis indicates that an intact sugar-binding pocket in this domain is crucial for bactericidal activity. The N-terminal MMBL domain (N-domain) adopts the same fold but is structurally more divergent and lacks a functional mannose-binding site. Differential activity of engineered N/C-domain chimers derived from two LlpA homologues with different killing spectra, disclosed that the N-domain determines target specificity. Apparently this bacteriocin is assembled from two structurally similar domains that evolved separately towards dedicated functions in target recognition and bacteriotoxicity.

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