4GA1 image
Deposition Date 2012-07-24
Release Date 2012-09-26
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4GA1
Title:
Structure of the N-terminal domain of Nup358
Biological Source:
Source Organism:
Pan troglodytes (Taxon ID: 9598)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.15 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 SUMO-PROTEIN LIGASE RANBP2
Gene (Uniprot):RANBP2
Mutations:I27(MSE), Y37(MSE), T92(MSE)
Chain IDs:A
Chain Length:150
Number of Molecules:1
Biological Source:Pan troglodytes
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Crystal structure of the N-terminal domain of Nup358/RanBP2.
J.Mol.Biol. 423 752 765 (2012)
PMID: 22959972 DOI: 10.1016/j.jmb.2012.08.026

Abstact

Key steps in mRNA export are the nuclear assembly of messenger ribonucleoprotein particles (mRNPs), the translocation of mRNPs through the nuclear pore complex (NPC), and the mRNP remodeling events at the cytoplasmic side of the NPC. Nup358/RanBP2 is a constituent of the cytoplasmic filaments of the NPC specific to higher eukaryotes and provides a multitude of binding sites for the nucleocytoplasmic transport machinery. Here, we present the crystal structure of the Nup358 N-terminal domain (NTD) at 0.95Å resolution. The structure reveals an α-helical domain that harbors three central tetratricopeptide repeats (TPRs), flanked on each side by an additional solvating amphipathic α helix. Overall, the NTD adopts an unusual extended conformation that lacks the characteristic peptide-binding groove observed in canonical TPR domains. Strikingly, the vast majority of the NTD surface exhibits an evolutionarily conserved, positive electrostatic potential, and we demonstrate that the NTD possesses the capability to bind single-stranded RNA in solution. Together, these data suggest that the NTD contributes to mRNP remodeling events at the cytoplasmic face of the NPC.

Legend

Protein

Chemical

Disease

Primary Citation of related structures