4G93 image
Entry Detail
PDB ID:
4G93
Keywords:
Title:
CRYSTAL STRUCTURE OF THE HUMAN HEPATITIS B VIRUS T = 4 CAPSID, ADYW STRAIN, in COMPLEX WITH THE PHENYLPROPENAMIDE ASSEMBLY ACCELERATOR AT-130
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2012-07-23
Release Date:
2013-07-24
Method Details:
Experimental Method:
Resolution:
4.20 Å
R-Value Free:
0.38
R-Value Work:
0.37
R-Value Observed:
0.37
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Capsid protein
Chain IDs:A, B, C, D
Chain Length:150
Number of Molecules:4
Biological Source:Hepatitis B virus subtype adyw
Ligand Molecules
Primary Citation
Assembly-directed antivirals differentially bind quasiequivalent pockets to modify hepatitis B virus capsid tertiary and quaternary structure.
Structure 21 1406 1416 (2013)
PMID: 23871485 DOI: 10.1016/j.str.2013.06.013

Abstact

Hepatitis B virus (HBV) is a major cause of liver disease. Assembly of the HBV capsid is a critical step in virus production and an attractive target for new antiviral therapies. We determined the structure of HBV capsid in complex with AT-130, a member of the phenylpropenamide family of assembly effectors. AT-130 causes tertiary and quaternary structural changes but does not disrupt capsid structure. AT-130 binds a hydrophobic pocket that also accommodates the previously characterized heteroaryldihydropyrimidine compounds but favors a unique quasiequivalent location on the capsid surface. Thus, this pocket is a promiscuous drug-binding site and a likely target for different assembly effectors with a broad range of mechanisms of activity. That AT-130 successfully decreases virus production by increasing capsid assembly rate without disrupting capsid structure delineates a paradigm in antiviral design, that disrupting reaction timing is a viable strategy for assembly effectors of HBV and other viruses.

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Primary Citation of related structures