4G8A image
Deposition Date 2012-07-23
Release Date 2012-10-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4G8A
Keywords:
Title:
Crystal structure of human TLR4 polymorphic variant D299G and T399I in complex with MD-2 and LPS
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Toll-like receptor 4
Gene (Uniprot):TLR4
Mutations:D299G, T399I
Chain IDs:A, B
Chain Length:635
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Lymphocyte antigen 96
Gene (Uniprot):LY96
Chain IDs:C, D
Chain Length:144
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural analyses of human Toll-like receptor 4 polymorphisms D299G and T399I
J.Biol.Chem. 287 40611 40617 (2012)
PMID: 23055527 DOI: 10.1074/jbc.M112.404608

Abstact

BACKGROUND TLR4 polymorphism replacing Asp-299 with Gly and Thr-399 with Ile (D299G/T399I) causes LPS hyporesponsiveness. RESULTS TLR4(SNPs)·MD-2·LPS exhibits an agonistic 2:2:2 architecture. Local structural differences were observed around D299G, but not around T399I, SNP site. CONCLUSION These local differences cause the modulation of surface properties of TLR4, which may affect ligand binding. SIGNIFICANCE This study provides structural evidence of the functionality of the mutant TLR4 carrying the SNPs. Toll-like receptor 4 (TLR4) and its coreceptor MD-2 recognize bacterial lipopolysaccharide (LPS) and signal the innate immune response. Two single nucleotide polymorphisms (SNPs) of human TLR4, D299G and T399I, have been identified and suggested to be associated with LPS hyporesponsiveness. Moreover, the SNPs have been proposed to be associated with a variety of infectious and noninfectious diseases. However, how the SNPs affect the function of TLR4 remains largely unknown. Here, we report the crystal structure of the human TLR4 (D299G/T399I)·MD-2·LPS complex at 2.4 Å resolution. The ternary complex exhibited an agonistic "m"-shaped 2:2:2 architecture that was similar to that of the human wild type TLR4·MD-2·LPS complex. Local structural differences that might affect the binding of the ligands were observed around D299G, but not around T399I, SNP site.

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