4G5G image
Deposition Date 2012-07-17
Release Date 2012-12-26
Last Version Date 2023-11-15
Entry Detail
PDB ID:
4G5G
Title:
ef-tu (Escherichia coli) complexed with nvp-ldu796
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongation factor Tu 1
Gene (Uniprot):tufA
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:thiomuracin A derivative
Chain IDs:B (auth: I)
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
05N B PRO (3R,4R)-4-HYDROXY-3-METHYL-L-PROLINE
BB6 B CYS (2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID
BB9 B CYS ?
H14 B PHE (2S,3R)-BETA-HYDROXY-PHENYLALANINE
MH6 B SER 3-HYDROXY-2-IMINOPROPANOIC ACID
Peptide-like Molecules
PRD_000901
Primary Citation
Antibiotic optimization and chemical structure stabilization of thiomuracin A.
J.Med.Chem. 55 6934 6941 (2012)
PMID: 22812377 DOI: 10.1021/jm300783c

Abstact

Synthetic studies of the antimicrobial secondary metabolite thiomuracin A (1) were initiated to improve chemical stability and physicochemical properties. Functional group modifications of 1 included removing the C2-C7 side chain, derivatizing the C84 epoxide region, and altering the C44 hydroxyphenylalanine motif. The resulting derivatives simplified and stabilized the chemical structure and were evaluated for antibacterial activity relative to 1. The simplified structure and improved organic solubility of the derivatives facilitated isolation yields from fermentation broths and simplified the procedures involved for the process. These advancements increased material supply for continued medicinal chemistry optimization and culminated in the identification of 2, a structurally simplified and chemically stable analogue of 1 which retained potent antibiotic activity.

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Protein

Chemical

Disease

Primary Citation of related structures