4G35 image
Deposition Date 2012-07-13
Release Date 2012-12-05
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4G35
Title:
Mcl-1 in complex with a biphenyl cross-linked Noxa peptide.
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Induced myeloid leukemia cell differentiation protein Mcl-1 homolog
Gene (Uniprot):Mcl1
Chain IDs:A
Chain Length:165
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Noxa BH3 peptide (cysteine-mediated cross-linked)
Chain IDs:B
Chain Length:21
Number of Molecules:1
Biological Source:
Ligand Molecules
Peptide-like Molecules
PRD_000921
Primary Citation
Rational design of proteolytically stable, cell-permeable peptide-based selective Mcl-1 inhibitors.
J.Am.Chem.Soc. 134 14734 14737 (2012)
PMID: 22920569 DOI: 10.1021/ja306864v

Abstact

Direct chemical modifications provide a simple and effective means to "translate" bioactive helical peptides into potential therapeutics targeting intracellular protein-protein interactions. We previously showed that distance-matching bisaryl cross-linkers can reinforce peptide helices containing two cysteines at the i and i+7 positions and confer cell permeability to the cross-linked peptides. Here we report the first crystal structure of a biphenyl-cross-linked Noxa peptide in complex with its target Mcl-1 at 2.0 Å resolution. Guided by this structure, we remodeled the surface of this cross-linked peptide through side-chain substitution and N-methylation and obtained a pair of cross-linked peptides with substantially increased helicity, cell permeability, proteolytic stability, and cell-killing activity in Mcl-1-overexpressing U937 cells.

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Primary Citation of related structures