4FZO image
Deposition Date 2012-07-06
Release Date 2013-12-11
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4FZO
Title:
Crystal Structure of the apo-form uranyl binding protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uranyl binding protein
Gene (Uniprot):MTH_1690
Mutagens:L13D, D17E, H64E, L67T
Chain IDs:A, B
Chain Length:82
Number of Molecules:2
Biological Source:Methanothermobacter thermautotrophicus
Primary Citation
A protein engineered to bind uranyl selectively and with femtomolar affinity.
Nat Chem 6 236 241 (2014)
PMID: 24557139 DOI: 10.1038/nchem.1856

Abstact

Uranyl (UO2(2+)), the predominant aerobic form of uranium, is present in the ocean at a concentration of ~3.2 parts per 10(9) (13.7 nM); however, the successful enrichment of uranyl from this vast resource has been limited by the high concentrations of metal ions of similar size and charge, which makes it difficult to design a binding motif that is selective for uranyl. Here we report the design and rational development of a uranyl-binding protein using a computational screening process in the initial search for potential uranyl-binding sites. The engineered protein is thermally stable and offers very high affinity and selectivity for uranyl with a Kd of 7.4 femtomolar (fM) and >10,000-fold selectivity over other metal ions. We also demonstrated that the uranyl-binding protein can repeatedly sequester 30-60% of the uranyl in synthetic sea water. The chemical strategy employed here may be applied to engineer other selective metal-binding proteins for biotechnology and remediation applications.

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Primary Citation of related structures