4FN5 image
Deposition Date 2012-06-19
Release Date 2012-09-26
Last Version Date 2024-07-10
Entry Detail
PDB ID:
4FN5
Title:
ELONGATION FACTOR G 1 (PSEUDOMONAS AERUGINOSA) IN COMPLEX WITH Argyrin B
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.30
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Elongation factor G 1
Gene (Uniprot):fusA
Chain IDs:A
Chain Length:709
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Polymer Type:polypeptide(L)
Molecule:Argyrin B
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:Actinoplanes sp.
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
0UO B TRP 4-METHOXY-L-TRYPTOPHAN
BB9 B CYS ?
DHA B SER 2-AMINO-ACRYLIC ACID
SAR B GLY SARCOSINE
Primary Citation

Abstact

Argyrins, produced by myxobacteria and actinomycetes, are cyclic octapeptides with antibacterial and antitumor activity. Here, we identify elongation factor G (EF-G) as the cellular target of argyrin B in bacteria, via resistant mutant selection and whole genome sequencing, biophysical binding studies and crystallography. Argyrin B binds a novel allosteric pocket in EF-G, distinct from the known EF-G inhibitor antibiotic fusidic acid, revealing a new mode of protein synthesis inhibition. In eukaryotic cells, argyrin B was found to target mitochondrial elongation factor G1 (EF-G1), the closest homologue of bacterial EF-G. By blocking mitochondrial translation, argyrin B depletes electron transport components and inhibits the growth of yeast and tumor cells. Further supporting direct inhibition of EF-G1, expression of an argyrin B-binding deficient EF-G1 L693Q variant partially rescued argyrin B-sensitivity in tumor cells. In summary, we show that argyrin B is an antibacterial and cytotoxic agent that inhibits the evolutionarily conserved target EF-G, blocking protein synthesis in bacteria and mitochondrial translation in yeast and mammalian cells.

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Primary Citation of related structures