4FI3 image
Deposition Date 2012-06-07
Release Date 2012-09-19
Last Version Date 2024-10-09
Entry Detail
PDB ID:
4FI3
Title:
Structure of vitamin B12 transporter BtuCD-F in a nucleotide-bound state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.47 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vitamin B12 import system permease protein BtuC
Gene (Uniprot):btuC
Mutagens:C18S, C32S, C120S, C156S, C205S, C206S, C267S
Chain IDs:A, B
Chain Length:349
Number of Molecules:2
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vitamin B12 import ATP-binding protein BtuD
Gene (Uniprot):btuD
Mutagens:C180S, E159Q, N162C
Chain IDs:C, D
Chain Length:249
Number of Molecules:2
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vitamin B12-binding protein
Gene (Uniprot):btuF
Chain IDs:E (auth: F)
Chain Length:255
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Structure of AMP-PNP-bound vitamin B12 transporter BtuCD-F.
Nature 490 367 372 (2012)
PMID: 23000901 DOI: 10.1038/nature11442

Abstact

The ATP-binding cassette (ABC) transporter BtuCD mediates the uptake of vitamin B(12) across the inner membrane of Escherichia coli. Previous structures have shown the conformations of apo states, but the transport mechanism has remained unclear. Here we report the 3.5 Å crystal structure of the transporter-binding protein complex BtuCD-BtuF (BtuCD-F) trapped in an β-γ-imidoadenosine 5'-phosphate (AMP-PNP)-bound intermediate state. Although the ABC domains (BtuD subunits) form the expected closed sandwich dimer, the membrane-spanning BtuC subunits adopt a new conformation, with the central translocation pathway sealed by a previously unrecognized cytoplasmic gate. A fully enclosed cavity is thus formed approximately halfway across the membrane. It is large enough to accommodate a vitamin B(12) molecule, and radioligand trapping showed that liposome-reconstituted BtuCD-F indeed contains bound B(12) in the presence of AMP-PNP. In combination with engineered disulphide crosslinking and functional assays, our data suggest an unexpected peristaltic transport mechanism that is distinct from those observed in other ABC transporters.

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Primary Citation of related structures
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