4FH1 image
Deposition Date 2012-06-05
Release Date 2013-01-09
Last Version Date 2023-09-13
Entry Detail
PDB ID:
4FH1
Keywords:
Title:
S. cerevisiae Ubc13-N79A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.61 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 13
Gene (Uniprot):UBC13
Mutagens:N79A, C87S
Chain IDs:A
Chain Length:153
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
A conserved asparagine has a structural role in ubiquitin-conjugating enzymes.
Nat.Chem.Biol. 9 154 156 (2013)
PMID: 23292652 DOI: 10.1038/nchembio.1159

Abstact

It is widely accepted that ubiquitin-conjugating enzymes contain an active site asparagine that serves as an oxyanion hole, thereby stabilizing a negatively charged transition state intermediate and promoting ubiquitin transfer. Using structural and biochemical approaches to study the role of the conserved asparagine to ubiquitin conjugation by Ubc13-Mms2, we conclude that the importance of this residue stems primarily from its structural role in stabilizing an active site loop.

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Primary Citation of related structures