4F4L image
Deposition Date 2012-05-10
Release Date 2012-10-03
Last Version Date 2023-09-13
Entry Detail
PDB ID:
4F4L
Keywords:
Title:
Open Channel Conformation of a Voltage Gated Sodium Channel
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.49 Å
R-Value Free:
0.28
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ion transport protein
Gene (Uniprot):Mmc1_0798
Chain IDs:A, B, C, D
Chain Length:112
Number of Molecules:4
Biological Source:Magnetococcus marinus
Primary Citation
Structure of a bacterial voltage-gated sodium channel pore reveals mechanisms of opening and closing.
Nat Commun 3 1102 1102 (2012)
PMID: 23033078 DOI: 10.1038/ncomms2077

Abstact

Voltage-gated sodium channels are vital membrane proteins essential for electrical signalling; in humans, they are key targets for the development of pharmaceutical drugs. Here we report the crystal structure of an open-channel conformation of NavMs, the bacterial channel pore from the marine bacterium Magnetococcus sp. (strain MC-1). It differs from the recently published crystal structure of a closed form of a related bacterial sodium channel (NavAb) by having its internal cavity accessible to the cytoplasmic surface as a result of a bend/rotation about a central residue in the carboxy-terminal transmembrane segment. This produces an open activation gate of sufficient diameter to allow hydrated sodium ions to pass through. Comparison of the open and closed structures provides new insight into the features of the functional states present in the activation cycles of sodium channels and the mechanism of channel opening and closing.

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