4ELY image
Entry Detail
PDB ID:
4ELY
Keywords:
Title:
CCDBVFI:GYRA14EC
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2012-04-11
Release Date:
2012-05-30
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA gyrase subunit A
Chain IDs:A, B
Chain Length:156
Number of Molecules:2
Biological Source:Shigella flexneri
Polymer Type:polypeptide(L)
Description:CcdB
Chain IDs:C, D
Chain Length:105
Number of Molecules:2
Biological Source:Aliivibrio fischeri
Primary Citation
Alternative interactions define gyrase specificity in the CcdB family.
Mol.Microbiol. 84 965 978 (2012)
PMID: 22582791 DOI: 10.1111/j.1365-2958.2012.08069.x

Abstact

Toxin-antitoxin (TA) modules are small operons associated with stress response of bacteria. F-plasmid CcdB(F) was the first TA toxin for which its target, gyrase, was identified. Plasmidic and chromosomal CcdBs belong to distinct families. Conserved residues crucial for gyrase poisoning activity of plasmidic CcdBs are not conserved among these families. Here we show that the chromosomal CcdB(Vfi) from Vibrio fischeri is an active gyrase poison that interacts with its target via an alternative energetic mechanism. Changes in the GyrA14-binding surface of the Vibrio and F-plasmid CcdB family members illustrate neutral drift where alternative interactions can be used to achieve the same functionality. Differences in affinity between V. fischeri and F-plasmid CcdB for gyrase and their corresponding CcdA antitoxin possibly reflect distinct roles for TA modules located on plasmids and chromosomes.

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