4EKO image
Deposition Date 2012-04-09
Release Date 2012-08-29
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4EKO
Keywords:
Title:
Initial Thaumatin Structure for Radiation Damage Experiment at 180 K
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thaumatin-1
Chain IDs:A
Chain Length:207
Number of Molecules:1
Biological Source:Thaumatococcus daniellii
Ligand Molecules
Primary Citation
Spatial distribution of radiation damage to crystalline proteins at 25-300 K.
Acta Crystallogr.,Sect.D 68 1108 1117 (2012)
PMID: 22948911 DOI: 10.1107/S0907444912021361

Abstact

The spatial distribution of radiation damage (assayed by increases in atomic B factors) to thaumatin and urease crystals at temperatures ranging from 25 to 300 K is reported. The nature of the damage changes dramatically at approximately 180 K. Above this temperature the role of solvent diffusion is apparent in thaumatin crystals, as solvent-exposed turns and loops are especially sensitive. In urease, a flap covering the active site is the most sensitive part of the molecule and nearby loops show enhanced sensitivity. Below 180 K sensitivity is correlated with poor local packing, especially in thaumatin. At all temperatures, the component of the damage that is spatially uniform within the unit cell accounts for more than half of the total increase in the atomic B factors and correlates with changes in mosaicity. This component may arise from lattice-level, rather than local, disorder. The effects of primary structure on radiation sensitivity are small compared with those of tertiary structure, local packing, solvent accessibility and crystal contacts.

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Primary Citation of related structures