4EKJ image
Entry Detail
PDB ID:
4EKJ
Keywords:
Title:
Crystal structure of a monomeric beta-xylosidase from Caulobacter crescentus CB15
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-04-09
Release Date:
2012-09-26
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-xylosidase
Chain IDs:A
Chain Length:500
Number of Molecules:1
Biological Source:Caulobacter vibrioides
Ligand Molecules
Primary Citation
The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 beta-xylosidases.
Acta Crystallogr.,Sect.D 68 1339 1345 (2012)
PMID: 22993088 DOI: 10.1107/S0907444912028491

Abstact

β-Xylosidases (EC 3.2.1.37) are among the principal glycosyl hydrolases involved in the breakdown of hemicelluloses, catalyzing the reduction of xylooligosaccharides to free xylose. All GH39 β-xylosidases structurally characterized to date display a modular multi-domain organization that assembles a tetrameric quaternary structure. In this work, the crystal structure and the SAXS molecular envelope of a new GH39 β-xylosidase from Caulobacter crescentus (CcXynB2) have been determined. Interestingly, CcXynB2 is a monomer in solution and comparative structural analyses suggest that the shortened C-terminus prevents the formation of a stable tetramer. Moreover, CcXynB2 has a longer loop from the auxiliary domain (the long α-helix-containing loop) which makes a number of polar and hydrophobic contacts with the parental (α/β)(8)-barrel domain, modifying the accessibility and the molecular topography of the catalytic interface. These interactions also maintain the accessory domain tightly linked to the catalytic core, which may be important for enzyme function and stability.

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Primary Citation of related structures