4EFR image
Deposition Date 2012-03-30
Release Date 2012-08-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4EFR
Title:
Bombyx mori lipoprotein 7 (crystal form II) at 2.50 A resolution
Biological Source:
Source Organism:
Bombyx mori (Taxon ID: 7091)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:30kDa protein
Gene (Uniprot):101735447
Chain IDs:A, B, C, D
Chain Length:239
Number of Molecules:4
Biological Source:Bombyx mori
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
0AF A TRP 7-HYDROXY-L-TRYPTOPHAN
Ligand Molecules
Primary Citation
High-resolution structure of Bombyx mori lipoprotein 7: crystallographic determination of the identity of the protein and its potential role in detoxification.
Acta Crystallogr.,Sect.D 68 1140 1151 (2012)
PMID: 22948915 DOI: 10.1107/S0907444912021555

Abstact

Three crystal structures of a lipoprotein (Bmlp7) of unknown function, a member of the 30 kDa lipoprotein family from mulberry silkworm (Bombyx mori L.) haemolymph, have been determined. The 1.33 Å resolution structure is an excellent example of how a precise crystallographic study can contribute to protein identification. The correct sequence of this haemolymph-isolated protein was assigned thanks to superb-quality electron-density maps. Two unexpected cadmium cations were found in this crystal structure [Bmlp7-I(Cd)] and their presence may be connected to a detoxification mechanism in this insect. For a comparison of the metal-binding sites, the crystal structure of a platinum complex (Bmlp7-Pt) was also solved at 1.94 Å resolution. The third (2.50 Å resolution) structure, of the native protein harvested in a different season (Bmlp7-II), corresponds to a different polymorph with an altered pattern of intermolecular interactions and with a total absence of cadmium ions and highlights the possible involvement of Bmlp7 in the response to environmental pollution. The N-terminal domain of Bmlp7 has a fold resembling a clockwise spiral created by six helices and can be classified as a VHS domain. The C-terminal domain is folded as a β-trefoil. The biological function of Bmlp7 is unknown, but its structural homology to sugar-binding proteins suggests that, in analogy to other 30 kDa haemolymph lipoproteins, it could play a role as an anti-apoptotic factor or function in the immune response of the insect to fungal infections.

Legend

Protein

Chemical

Disease

Primary Citation of related structures