4EDY image
Deposition Date 2012-03-27
Release Date 2012-10-03
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4EDY
Title:
Crystal structure of hH-PGDS with water displacing inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hematopoietic prostaglandin D synthase
Gene (Uniprot):HPGDS
Chain IDs:A, B
Chain Length:199
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Investigation of the binding pocket of human hematopoietic prostaglandin (PG) D2 synthase (hH-PGDS): a tale of two waters.
Bioorg.Med.Chem.Lett. 22 3795 3799 (2012)
PMID: 22546671 DOI: 10.1016/j.bmcl.2012.04.004

Abstact

The inhibition of hH-PGDS has been proposed as a potential target for the development of anti-allergic and anti-inflammatory drugs. Herein we describe our investigation of the binding pocket of this important enzyme and our observation that two water molecules bind to our inhibitors and the enzyme. A series of compounds were prepared to the probe the importance of the water molecules in determining the binding affinity of the inhibitors to the enzyme. The study provides insight into the binding requirements for the design of potent hH-PGDS inhibitors.

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Primary Citation of related structures