4EB6 image
Entry Detail
PDB ID:
4EB6
Title:
Tubulin-Vinblastine: Stathmin-like complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-03-23
Release Date:
2012-08-01
Method Details:
Experimental Method:
Resolution:
3.47 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Description:Tubulin beta chain
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Description:Stathmin-4
Mutations:A58C, W64F
Chain IDs:E
Chain Length:142
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
Structural plasticity of tubulin assembly probed by vinca-domain ligands.
Acta Crystallogr.,Sect.D 68 927 934 (2012)
PMID: 22868758 DOI: 10.1107/S0907444912017143

Abstact

Vinca-domain ligands are compounds that bind to tubulin at its inter-heterodimeric interface and favour heterogeneous protofilament-like assemblies, giving rise to helices and rings. This is the basis for their inhibition of microtubule assembly, for their antimitotic activities and for their use in anticancer chemotherapy. Ustiloxins are vinca-domain ligands with a well established total synthesis. A 2.7 Å resolution structure of ustiloxin D bound to the vinca domain embedded in the complex of two tubulins with the stathmin-like domain of RB3 (T(2)R) has been determined. This finding precisely defines the interactions of ustiloxins with tubulin and, taken together with structures of other vinca-ligand complexes, allows structure-based suggestions to be made for improved activity. These comparisons also provide a rationale for the large-scale polymorphism of the protofilament-like assemblies mediated by vinca-domain ligands based on local differences in their interactions with the two tubulin heterodimers constituting their binding site.

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Primary Citation of related structures