ISDA: 4EAK

Deposition Date 2012-03-22

Release Date 2012-06-06

Last Version Date 2023-11-08

Entry Detail

PDB ID:

4EAK

Keywords:

TRANSFERASE

Title:

Co-crystal structure of an AMPK core with ATP

Biological Source:

Source Organism:

Rattus norvegicus (Taxon ID: 10116)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.25

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

C 1 2 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase catalytic subunit alpha-1
Gene (Uniprot):Prkaa1
Chain IDs:A
Chain Length:106
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P54645 Pfam ID:PF16579 EC:2.7.11.1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase subunit beta-1
Gene (Uniprot):Prkab1
Chain IDs:B
Chain Length:72
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P80386 Pfam ID:PF04739 EC:2.7.11.31

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase subunit gamma-1
Gene (Uniprot):Prkag1
Chain IDs:C
Chain Length:330
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P80385 Pfam ID:PF00571 EC:2.7.11.31

Ligand Molecules

ATP

TAM

Primary Citation

AMP-activated protein kinase undergoes nucleotide-dependent conformational changes

Chen, L, Wang, J, Zhang, Y.-Y, Yan, S.F, Neumann, D, Schlattner, U, Wang, Z.-X, Wu, J.-W.Show

Nat.Struct.Mol.Biol. 19 716 718 (2012)

PMID: 22659875 DOI: 10.1038/nsmb.2319

Abstact

The energy sensor AMP-activated protein kinase (AMPK) is a heterotrimeric complex that is allosterically activated by AMP binding to the γ subunit. Cocrystal structures of the mammalian AMPK core reveal occlusion of nucleotide-binding site 3 of the γ subunit in the presence of ATP. However, site 3 is occupied in the presence of AMP. Mutagenesis studies indicate that sites 3 and 4 are important for AMPK allosteric activation.

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Protein

Chemical

Disease

Primary Citation of related structures

Abstact

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