4E2I image
Deposition Date 2012-03-08
Release Date 2012-06-13
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4E2I
Title:
The Complex Structure of the SV40 Helicase Large T Antigen and p68 Subunit of DNA Polymerase Alpha-Primase
Biological Source:
Source Organism:
Simian virus 40 (Taxon ID: 10633)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.00 Å
R-Value Free:
0.31
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA polymerase alpha subunit B
Gene (Uniprot):POLA2
Chain IDs:M (auth: 2), N (auth: 3), O (auth: 6), P (auth: U), Q (auth: W), R (auth: 5), S (auth: 7), T (auth: 9), U (auth: 1), V (auth: 4), W (auth: 8)
Chain Length:78
Number of Molecules:11
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Large T antigen
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:362
Number of Molecules:12
Biological Source:Simian virus 40
Ligand Molecules
Primary Citation
Structural basis for the interaction of a hexameric replicative helicase with the regulatory subunit of human DNA polymerase alpha-primase.
J.Biol.Chem. 287 26854 26866 (2012)
PMID: 22700977 DOI: 10.1074/jbc.M112.363655

Abstact

DNA polymerase α-primase (Pol-prim) plays an essential role in eukaryotic DNA replication, initiating synthesis of the leading strand and of each Okazaki fragment on the lagging strand. Pol-prim is composed of a primase heterodimer that synthesizes an RNA primer, a DNA polymerase subunit that extends the primer, and a regulatory B-subunit (p68) without apparent enzymatic activity. Pol-prim is thought to interact with eukaryotic replicative helicases, forming a dynamic multiprotein assembly that displays primosome activity. At least three subunits of Pol-prim interact physically with the hexameric replicative helicase SV40 large T antigen, constituting a simple primosome that is active in vitro. However, structural understanding of these interactions and their role in viral chromatin replication in vivo remains incomplete. Here, we report the detailed large T antigen-p68 interface, as revealed in a co-crystal structure and validated by site-directed mutagenesis, and we demonstrate its functional importance in activating the SV40 primosome in cell-free reactions with purified Pol-prim, as well as in monkey cells in vivo.

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