4E0N image
Deposition Date 2012-03-04
Release Date 2012-12-19
Last Version Date 2023-11-15
Entry Detail
PDB ID:
4E0N
Keywords:
Title:
SVQIVYK segment from human Tau (305-311) displayed on 54-membered macrocycle scaffold (form II)
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclic pseudo-peptide SVQIVYK(ORN)EF(HAO)(4BF)K(ORN)
Chain IDs:A, B, C, D
Chain Length:14
Number of Molecules:4
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
4BF A TYR 4-BROMO-L-PHENYLALANINE
ORN A ALA L-ORNITHINE
Primary Citation
Out-of-register beta-sheets suggest a pathway to toxic amyloid aggregates.
Proc.Natl.Acad.Sci.USA 109 20913 20918 (2012)
PMID: 23213214 DOI: 10.1073/pnas.1218792109

Abstact

Although aberrant protein aggregation has been conclusively linked to dozens of devastating amyloid diseases, scientists remain puzzled about the molecular features that render amyloid fibrils or small oligomers toxic. Here, we report a previously unobserved type of amyloid fibril that tests as cytotoxic: one in which the strands of the contributing β-sheets are out of register. In all amyloid fibrils previously characterized at the molecular level, only in-register β-sheets have been observed, in which each strand makes its full complement of hydrogen bonds with the strands above and below it in the fibril. In out-of-register sheets, strands are sheared relative to one another, leaving dangling hydrogen bonds. Based on this finding, we designed out-of-register β-sheet amyloid mimics, which form both cylindrin-like oligomers and fibrils, and these mimics are cytotoxic. Structural and energetic considerations suggest that out-of-register fibrils can readily convert to toxic cylindrins. We propose that out-of-register β-sheets and their related cylindrins are part of a toxic amyloid pathway, which is distinct from the more energetically favored in-register amyloid pathway.

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Primary Citation of related structures