4DZG image
Deposition Date 2012-03-01
Release Date 2012-06-13
Last Version Date 2025-03-26
Entry Detail
PDB ID:
4DZG
Title:
Crystal structure of Aeromonas hydrophila PliG, a periplasmic lysozyme inhibitor of g-type lysozyme
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.02 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PliG
Gene (Uniprot):AHA_0125
Chain IDs:A
Chain Length:114
Number of Molecules:1
Biological Source:Aeromonas hydrophila subsp. hydrophila
Primary Citation
Structural characterization of the PliG lysozyme inhibitor family.
J.Struct.Biol. 180 235 242 (2012)
PMID: 22634186 DOI: 10.1016/j.jsb.2012.05.006

Abstact

Several Gram-negative bacteria protect themselves against the lytic action of host lysozymes by producing specific proteinaceous inhibitors. So far, four different families of lysozyme inhibitors have been identified including Ivy (Inhibitor of vertebrate lysozyme), MliC/PliC (Membrane associated/periplasmic inhibitor of C-type lysozyme), PliI and PliG (periplasmic inhibitors of I- and G-type lysozymes, respectively). Here we provide the first crystallographic description of the PliG family. Crystal structures were obtained for the PliG homologues from Escherichia coli, Salmonella enterica serotype Typhimurium and Aeromonas hydrophila. These structures show that the fold of the PliG family is very distinct from that of all other families of lysozyme inhibitors. Small-angle X-ray scattering studies reveal that PliG is monomeric in solution as opposed to the dimeric PliC and PliI. The PliG family shares a highly conserved SG(x)xY sequence motif with the MliC/PliC and PliI families where it was shown to reside on a loop that blocks the active site of lysozyme leading to inhibition. Surprisingly, we found that in PliG this motif is not well exposed and not involved in the inhibitory action. Instead, we could identify a distinct cluster of surface residues that are conserved across the PliG family and are essential for efficient G-type lysozyme inhibition, as evidenced by mutagenesis studies.

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