4DX9 image
Deposition Date 2012-02-27
Release Date 2013-01-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4DX9
Keywords:
Title:
ICAP1 in complex with integrin beta 1 cytoplasmic tail
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.99 Å
R-Value Free:
0.31
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin beta-1-binding protein 1
Gene (Uniprot):ITGB1BP1
Chain IDs:A, B (auth: 0), C (auth: k), E (auth: m), G (auth: 1), H (auth: C), K (auth: 2), L (auth: E), M (auth: 3), N (auth: G), Q (auth: o), S (auth: q), X (auth: I), Y (auth: 4), BA (auth: K), CA (auth: 5), FA (auth: M), HA (auth: O), JA (auth: a), KA (auth: s), MA (auth: u), PA (auth: c), RA (auth: e), TA (auth: g), VA (auth: i), XA (auth: Q), ZA (auth: S), BB (auth: U), DB (auth: W), EB (auth: w), GB (auth: Y), HB (auth: y)
Chain Length:157
Number of Molecules:32
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin beta-1
Gene (Uniprot):ITGB1
Chain IDs:D (auth: l), F (auth: n), I (auth: x), J (auth: D), O (auth: 8), P (auth: H), R (auth: p), T (auth: B), U (auth: 9), V (auth: F), W (auth: r), Z (auth: J), AA (auth: 7), DA (auth: L), EA (auth: 6), GA (auth: N), IA (auth: P), LA (auth: t), NA (auth: v), OA (auth: b), QA (auth: d), SA (auth: f), UA (auth: h), WA (auth: j), YA (auth: R), AB (auth: T), CB (auth: V), FB (auth: X), IB (auth: Z), JB (auth: z)
Chain Length:15
Number of Molecules:30
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Mechanism for KRIT1 Release of ICAP1-Mediated Suppression of Integrin Activation.
Mol.Cell 49 719 729 (2013)
PMID: 23317506 DOI: 10.1016/j.molcel.2012.12.005

Abstact

KRIT1 (Krev/Rap1 Interaction Trapped-1) mutations are observed in ∼40% of autosomal-dominant cerebral cavernous malformations (CCMs), a disease occurring in up to 0.5% of the population. We show that KRIT1 functions as a switch for β1 integrin activation by antagonizing ICAP1 (Integrin Cytoplasmic Associated Protein-1)-mediated modulation of "inside-out" activation. We present cocrystal structures of KRIT1 with ICAP1 and ICAP1 with integrin β1 cytoplasmic tail to 2.54 and 3.0 Å resolution (the resolutions at which I/σI = 2 are 2.75 and 3.0 Å, respectively). We find that KRIT1 binds ICAP1 by a bidentate surface, that KRIT1 directly competes with integrin β1 to bind ICAP1, and that KRIT1 antagonizes ICAP1-modulated integrin activation using this site. We also find that KRIT1 contains an N-terminal Nudix domain, in a region previously designated as unstructured. We therefore provide insights to integrin regulation and CCM-associated KRIT1 function.

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Disease

Primary Citation of related structures
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