4DX8 image
Deposition Date 2012-02-27
Release Date 2013-01-09
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4DX8
Keywords:
Title:
ICAP1 in complex with KRIT1 N-terminus
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.54 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrin beta-1-binding protein 1
Gene (Uniprot):ITGB1BP1
Chain IDs:A, B, C (auth: D), D (auth: E)
Chain Length:154
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Krev interaction trapped protein 1
Gene (Uniprot):KRIT1
Chain IDs:E (auth: H), F (auth: I), G (auth: J), H (auth: K)
Chain Length:203
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mechanism for KRIT1 Release of ICAP1-Mediated Suppression of Integrin Activation.
Mol.Cell 49 719 729 (2013)
PMID: 23317506 DOI: 10.1016/j.molcel.2012.12.005

Abstact

KRIT1 (Krev/Rap1 Interaction Trapped-1) mutations are observed in ∼40% of autosomal-dominant cerebral cavernous malformations (CCMs), a disease occurring in up to 0.5% of the population. We show that KRIT1 functions as a switch for β1 integrin activation by antagonizing ICAP1 (Integrin Cytoplasmic Associated Protein-1)-mediated modulation of "inside-out" activation. We present cocrystal structures of KRIT1 with ICAP1 and ICAP1 with integrin β1 cytoplasmic tail to 2.54 and 3.0 Å resolution (the resolutions at which I/σI = 2 are 2.75 and 3.0 Å, respectively). We find that KRIT1 binds ICAP1 by a bidentate surface, that KRIT1 directly competes with integrin β1 to bind ICAP1, and that KRIT1 antagonizes ICAP1-modulated integrin activation using this site. We also find that KRIT1 contains an N-terminal Nudix domain, in a region previously designated as unstructured. We therefore provide insights to integrin regulation and CCM-associated KRIT1 function.

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Primary Citation of related structures