4DVB image
Deposition Date 2012-02-23
Release Date 2013-01-16
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4DVB
Keywords:
Title:
The crystal structure of the Fab fragment of pro-uPA antibody mAb-112
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fab fragment of pro-uPA antibody mAb-112
Chain IDs:A, C (auth: H)
Chain Length:213
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab fragment of pro-uPA antibody mAb-112
Chain IDs:B, D (auth: L)
Chain Length:215
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Rezymogenation of active urokinase induced by an inhibitory antibody.
Biochem.J. 449 161 166 (2013)
PMID: 23016918 DOI: 10.1042/BJ20121132

Abstact

An important regulatory mechanism of serine proteases is the proteolytic conversion of the inactive pro-enzyme, or zymogen, into the active enzyme. This activation process is generally considered an irreversible process. In the present study, we demonstrate that an active enzyme can be converted back into its zymogen form. We determined the crystal structure of uPA (urokinase-type plasminogen activator) in complex with an inhibitory antibody, revealing that the antibody 'rezymogenizes' already activated uPA. The present study demonstrates a new regulatory mechanism of protease activity, which is also an extreme case of protein allostery. Mechanistically, the antibody binds a single surface-exposed loop, named the autolysis loop, thereby preventing the stabilization of uPA in its active conformation. We argue that this autolysis loop is a key structural element for rezymogenation of other proteases, and will be a new target site for pharmacological intervention with serine protease activity.

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