4DUU image
Deposition Date 2012-02-22
Release Date 2012-03-28
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4DUU
Keywords:
Title:
The X-ray Crystal Structure of Full-Length type I Human Plasminogen
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
5.20 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Plasminogen
Gene (Uniprot):PLG
Chain IDs:A
Chain Length:791
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
The X-ray crystal structure of full-length human plasminogen
Cell Rep 1 185 190 (2012)
PMID: 22832192 DOI: 10.1016/j.celrep.2012.02.012

Abstact

Plasminogen is the proenzyme precursor of the primary fibrinolytic protease plasmin. Circulating plasminogen, which comprises a Pan-apple (PAp) domain, five kringle domains (KR1-5), and a serine protease (SP) domain, adopts a closed, activation-resistant conformation. The kringle domains mediate interactions with fibrin clots and cell-surface receptors. These interactions trigger plasminogen to adopt an open form that can be cleaved and converted to plasmin by tissue-type and urokinase-type plasminogen activators. Here, the structure of closed plasminogen reveals that the PAp and SP domains, together with chloride ions, maintain the closed conformation through interactions with the kringle array. Differences in glycosylation alter the position of KR3, although in all structures the loop cleaved by plasminogen activators is inaccessible. The ligand-binding site of KR1 is exposed and likely governs proenzyme recruitment to targets. Furthermore, analysis of our structure suggests that KR5 peeling away from the PAp domain may initiate plasminogen conformational change.

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Primary Citation of related structures