4DS7 image
Deposition Date 2012-02-18
Release Date 2012-03-07
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4DS7
Keywords:
Title:
Crystal structure of yeast calmodulin bound to the C-terminal fragment of spindle pole body protein Spc110
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Calmodulin
Gene (Uniprot):CMD1
Chain IDs:A, B, C, D
Chain Length:147
Number of Molecules:4
Biological Source:Kluyveromyces lactis
Polymer Type:polypeptide(L)
Molecule:Spindle pole body component 110
Gene (Uniprot):SPC110
Chain IDs:E, F, G, H
Chain Length:55
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae S288c
Primary Citation
The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.
Mol.Biol.Cell 28 3298 3314 (2017)
PMID: 28814505 DOI: 10.1091/mbc.E17-06-0397

Abstact

Microtubule-organizing centers (MTOCs) form, anchor, and stabilize the polarized network of microtubules in a cell. The central MTOC is the centrosome that duplicates during the cell cycle and assembles a bipolar spindle during mitosis to capture and segregate sister chromatids. Yet, despite their importance in cell biology, the physical structure of MTOCs is poorly understood. Here we determine the molecular architecture of the core of the yeast spindle pole body (SPB) by Bayesian integrative structure modeling based on in vivo fluorescence resonance energy transfer (FRET), small-angle x-ray scattering (SAXS), x-ray crystallography, electron microscopy, and two-hybrid analysis. The model is validated by several methods that include a genetic analysis of the conserved PACT domain that recruits Spc110, a protein related to pericentrin, to the SPB. The model suggests that calmodulin can act as a protein cross-linker and Spc29 is an extended, flexible protein. The model led to the identification of a single, essential heptad in the coiled-coil of Spc110 and a minimal PACT domain. It also led to a proposed pathway for the integration of Spc110 into the SPB.

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