4DJH image
Deposition Date 2012-02-01
Release Date 2012-03-21
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4DJH
Title:
Structure of the human kappa opioid receptor in complex with JDTic
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kappa-type opioid receptor, Lysozyme
Gene (Uniprot):E, OPRK1
Mutagens:I135L, C54T, C97A
Chain IDs:A, B
Chain Length:480
Number of Molecules:2
Biological Source:Homo Sapiens, Enterobacteria phage T4
Primary Citation
tructure of the human kappa-opioid receptor in complex with JDTic
Nature 485 327 332 (2012)
PMID: 22437504 DOI: 10.1038/nature10939

Abstact

Opioid receptors mediate the actions of endogenous and exogenous opioids on many physiological processes, including the regulation of pain, respiratory drive, mood, and--in the case of κ-opioid receptor (κ-OR)--dysphoria and psychotomimesis. Here we report the crystal structure of the human κ-OR in complex with the selective antagonist JDTic, arranged in parallel dimers, at 2.9 Å resolution. The structure reveals important features of the ligand-binding pocket that contribute to the high affinity and subtype selectivity of JDTic for the human κ-OR. Modelling of other important κ-OR-selective ligands, including the morphinan-derived antagonists norbinaltorphimine and 5'-guanidinonaltrindole, and the diterpene agonist salvinorin A analogue RB-64, reveals both common and distinct features for binding these diverse chemotypes. Analysis of site-directed mutagenesis and ligand structure-activity relationships confirms the interactions observed in the crystal structure, thereby providing a molecular explanation for κ-OR subtype selectivity, and essential insights for the design of compounds with new pharmacological properties targeting the human κ-OR.

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Primary Citation of related structures