4DJF image
Deposition Date 2012-02-01
Release Date 2012-03-14
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4DJF
Title:
Crystal structure of folate-bound corrinoid iron-sulfur protein (CFeSP) in complex with its methyltransferase (MeTr), co-crystallized with folate and Ti(III) citrate reductant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.03 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase
Gene (Uniprot):acsE
Chain IDs:A, B
Chain Length:262
Number of Molecules:2
Biological Source:Moorella thermoacetica
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Corrinoid/iron-sulfur protein large subunit
Gene (Uniprot):acsC
Chain IDs:C, E
Chain Length:446
Number of Molecules:2
Biological Source:Moorella thermoacetica
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Corrinoid/iron-sulfur protein small subunit
Gene (Uniprot):acsD
Chain IDs:D, F
Chain Length:323
Number of Molecules:2
Biological Source:Moorella thermoacetica
Primary Citation
Visualizing molecular juggling within a B12-dependent methyltransferase complex.
Nature 484 265 269 (2012)
PMID: 22419154 DOI: 10.1038/nature10916

Abstact

Derivatives of vitamin B(12) are used in methyl group transfer in biological processes as diverse as methionine synthesis in humans and CO(2) fixation in acetogenic bacteria. This seemingly straightforward reaction requires large, multimodular enzyme complexes that adopt multiple conformations to alternately activate, protect and perform catalysis on the reactive B(12) cofactor. Crystal structures determined thus far have provided structural information for only fragments of these complexes, inspiring speculation about the overall protein assembly and conformational movements inherent to activity. Here we present X-ray crystal structures of a complete 220 kDa complex that contains all enzymes responsible for B(12)-dependent methyl transfer, namely the corrinoid iron-sulphur protein and its methyltransferase from the model acetogen Moorella thermoacetica. These structures provide the first three-dimensional depiction of all protein modules required for the activation, protection and catalytic steps of B(12)-dependent methyl transfer. In addition, the structures capture B(12) at multiple locations between its 'resting' and catalytic positions, allowing visualization of the dramatic protein rearrangements that enable methyl transfer and identification of the trajectory for B(12) movement within the large enzyme scaffold. The structures are also presented alongside in crystallo spectroscopic data, which confirm enzymatic activity within crystals and demonstrate the largest known conformational movements of proteins in a crystalline state. Taken together, this work provides a model for the molecular juggling that accompanies turnover and helps explain why such an elaborate protein framework is required for such a simple, yet biologically essential reaction.

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