4DIZ image
Deposition Date 2012-02-01
Release Date 2012-07-18
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4DIZ
Keywords:
Title:
Thaumatin I by Classical Hanging Drop Method at 1.98A resolution for Unique Water Distribution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thaumatin I
Chain IDs:A
Chain Length:207
Number of Molecules:1
Biological Source:Thaumatococcus daniellii
Primary Citation
Unique water distribution of Langmuir-Blodgett versus classical crystals.
J.Struct.Biol. 180 57 64 (2012)
PMID: 22706161 DOI: 10.1016/j.jsb.2012.05.021

Abstact

Langmuir-Blodgett films when used as nanotemplates for crystallization often leads to marked changes in protein stability and structure. Earlier we found that stability of proteins is also correlated with aqueous surroundings in the crystals. Here we study the direct relationships between presence of LB nanotemplates and unique patterns of water molecules surrounding the protein, for four model proteins for which 3D structures are available, and where crystallization conditions for each protein are the same except the presence of LB nanotemplate. Shape of frequency distribution of volumes occupied by water molecules were analyzed. They were found to be different between "classical" samples of different proteins, but surprisingly quite similar for LB samples. Volumes occupied by each water molecule as the function of the distance of the given molecule from the protein surface were studied. Introduction of LB film leads to appearance of water molecules close to protein surface but occupying large volumes. These findings confirm earlier experimental findings on the role of water molecules in determining protein stability and thereby pointing to water as a possible candidate for differences apparent in LB crystal stability against radiation.

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