4DID image
Deposition Date 2012-01-30
Release Date 2012-02-29
Last Version Date 2023-09-13
Entry Detail
PDB ID:
4DID
Title:
Crystal structure of Salmonella effector N-terminal domain SopB in complex with Cdc42
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cell division control protein 42 homolog
Gene (Uniprot):CDC42
Chain IDs:A
Chain Length:193
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Inositol phosphate phosphatase sopB
Gene (Uniprot):sopB
Chain IDs:B
Chain Length:152
Number of Molecules:1
Biological Source:Salmonella enterica subsp. enterica serovar Typhimurium
Primary Citation
Structure of Salmonella Effector Protein SopB N-terminal Domain in Complex with Host Rho GTPase Cdc42.
J.Biol.Chem. 287 13348 13355 (2012)
PMID: 22362774 DOI: 10.1074/jbc.M111.331330

Abstact

SopB is a type III secreted Salmonella effector protein with phosphoinositide phosphatase activity and a distinct GTPase binding domain. The latter interacts with host Cdc42, an essential Rho GTPase that regulates critical events in eukaryotic cytoskeleton organization and membrane trafficking. Structural and biochemical analysis of the SopB GTPase binding domain in complex with Cdc42 shows for the first time that SopB structurally and functionally mimics a host guanine nucleotide dissociation inhibitor (GDI) by contacting key residues in the regulatory switch regions of Cdc42 and slowing Cdc42 nucleotide exchange.

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Primary Citation of related structures