ISDA: 4DAG

Deposition Date 2012-01-12

Release Date 2012-02-29

Last Version Date 2024-11-20

Entry Detail

PDB ID:

4DAG

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

Structure of the Human Metapneumovirus Fusion Protein with Neutralizing Antibody Identifies a Pneumovirus Antigenic Site

Biological Source:

Source Organism:

Human metapneumovirus (Taxon ID: 162145)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.39 Å

R-Value Free:

0.28

R-Value Work:

0.25

R-Value Observed:

0.26

Space Group:

P 63 2 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F0
Mutagens:Domains I, II and III
Chain IDs:A
Chain Length:415
Number of Molecules:1
Biological Source:Human metapneumovirus

UniProt ID:G3KCK8 Pfam ID:PF00523

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Neutralizing Antibody DS7 heavy chain
Gene (Uniprot):IGHG1
Chain IDs:B (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P01857 Pfam ID:PF07654

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Neutralizing Antibody DS7 light chain
Gene (Uniprot):IGL@
Chain IDs:C (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8N5F4 Pfam ID:PF07686, PF07654

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ASN	A	ASN	GLYCOSYLATION SITE

Ligand Molecules

Primary Citation

Structure of the human metapneumovirus fusion protein with neutralizing antibody identifies a pneumovirus antigenic site.

Wen, X, Krause, J.C, Leser, G.P, Cox, R.G, Lamb, R.A, Williams, J.V, Crowe, J.E, Jardetzky, T.S.Show

Nat.Struct.Mol.Biol. 19 461 463 (2012)

PMID: 22388735 DOI: 10.1038/nsmb.2250

Abstact

Human metapneumovirus and respiratory syncytial virus cause lower respiratory tract infections. The virus fusion (F) glycoprotein promotes membrane fusion by refolding from a metastable pre-fusion to a stable post-fusion conformation. F is also a major target of the neutralizing antibody response. Here we show that a potently neutralizing anti-human metapneumovirus antibody (DS7) binds a structurally invariant domain of F, revealing a new epitope that could be targeted in vaccine development.

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Primary Citation of related structures

Abstact

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