4D9L image
Deposition Date 2012-01-11
Release Date 2012-03-21
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4D9L
Keywords:
Title:
Fab structure of anti-HIV-1 gp120 V2 mAb 697
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
Gene (Uniprot):IGH@
Chain IDs:B (auth: H), D (auth: I), F (auth: J), H (auth: K)
Chain Length:223
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of Fab fragment of anti-HIV1 gp120 V2 mAb 697
Gene (Uniprot):IGL@
Chain IDs:A (auth: L), C (auth: M), E (auth: N), G (auth: O)
Chain Length:215
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Functional and immunochemical cross-reactivity of V2-specific monoclonal antibodies from HIV-1-infected individuals.
Virology 427 198 207 (2012)
PMID: 22402248 DOI: 10.1016/j.virol.2012.02.003

Abstact

The recent analysis of the first successful RV144 vaccine trial revealed that a high titer of plasma anti-V2 antibodies (Abs) correlated with a decreased risk of HIV-1 infection in vaccine recipients. To understand the mechanism of immune correlates, we studied seven anti-V2 monoclonal Abs (mAbs) developed from HIV-1 infected individuals. The V2 mAbs target conserved epitopes, including the binding site for α4β7 integrin, and are broadly cross-reactive with various gp120 proteins. Preferential usage of the VH1-69 gene by V2 mAbs may depend on selection by the same antigenic structure. Six of seven V2 mAbs weakly neutralized four to eight of the 41 pseudoviruses tested and resistance to neutralization was correlated with longer V2 domains. The data suggest the presence of shared, conserved structural elements in the V2 loop, and these can be used in the design of vaccine immunogens inducing broadly reactive Abs with anti-viral activities.

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