4D8S image
Deposition Date 2012-01-11
Release Date 2013-02-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4D8S
Keywords:
Title:
Influenza NA in complex with antiviral compound
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
I 4
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neuraminidase
Gene (Uniprot):NA
Mutagens:G293N
Chain IDs:A
Chain Length:390
Number of Molecules:1
Biological Source:Influenza A virus
Primary Citation
Exploring the interactions of unsaturated glucuronides with influenza virus sialidase.
J.Med.Chem. 55 8963 8968 (2012)
PMID: 23017008 DOI: 10.1021/jm301145k

Abstact

A series of C3 O-functionalized 2-acetamido-2-deoxy-Δ⁴-β-D-glucuronides were synthesized to explore noncharge interactions in subsite 2 of the influenza virus sialidase active site. In complex with A/N8 sialidase, the parent compound (C3 OH) inverts its solution conformation to bind with all substituents well positioned in the active site. The parent compound inhibits influenza virus sialidase at a sub-μM level; the introduction of small alkyl substituents or an acetyl group at C3 is also tolerated.

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Primary Citation of related structures
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