4D8I image
Deposition Date 2012-01-10
Release Date 2012-06-06
Last Version Date 2025-03-26
Entry Detail
PDB ID:
4D8I
Title:
High resolution structures of monomeric S. pyogenes SpeB reveals role of glycine-rich active site loop
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.38 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Streptopain
Chain IDs:A
Chain Length:261
Number of Molecules:1
Biological Source:Streptococcus pyogenes
Ligand Molecules
Peptide-like Molecules
PRD_000793
Primary Citation
Ultrahigh and High Resolution Structures and Mutational Analysis of Monomeric Streptococcus pyogenes SpeB Reveal a Functional Role for the Glycine-rich C-terminal Loop.
J.Biol.Chem. 287 24412 24426 (2012)
PMID: 22645124 DOI: 10.1074/jbc.M112.361576

Abstact

Cysteine protease SpeB is secreted from Streptococcus pyogenes and has been studied as a potential virulence factor since its identification almost 70 years ago. Here, we report the crystal structures of apo mature SpeB to 1.06 Å resolution as well as complexes with the general cysteine protease inhibitor trans-epoxysuccinyl-l-leucylamido(4-guanidino)butane and a novel substrate mimetic peptide inhibitor. These structures uncover conformational changes associated with maturation of SpeB from the inactive zymogen to its active form and identify the residues required for substrate binding. With the use of a newly developed fluorogenic tripeptide substrate to measure SpeB activity, we determined IC(50) values for trans-epoxysuccinyl-l-leucylamido(4-guanidino)butane and our new peptide inhibitor and the effects of mutations within the C-terminal active site loop. The structures and mutational analysis suggest that the conformational movements of the glycine-rich C-terminal loop are important for the recognition and recruitment of biological substrates and release of hydrolyzed products.

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