4D7M image
Entry Detail
PDB ID:
4D7M
Keywords:
Title:
TetR(D) in complex with anhydrotetracycline and magnesium
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-11-25
Release Date:
2014-12-10
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TETRACYCLINE REPRESSOR PROTEIN CLASS D
Chain IDs:A
Chain Length:217
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Primary Citation
Tetracycline Repressor Allostery Does not Depend on Divalent Metal Recognition.
Biochemistry 53 7990 ? (2014)
PMID: 25432019 DOI: 10.1021/BI5012805

Abstact

Genes that render bacteria resistant to tetracycline-derived antibiotics are tightly regulated by repressors of the TetR family. In their physiologically relevant, magnesium-complexed form, tetracyclines induce allosteric rearrangements in the TetR homodimer, leading to its release from the promoter and derepression of transcription. According to earlier crystallographic work, recognition of the tetracycline-associated magnesium ion by TetR is crucial and triggers the allosteric cascade. Nevertheless, the derivative 5a,6-anhydrotetracycline, which shows an increased affinity for TetR, causes promoter release even in the absence of magnesium. To resolve this paradox, it has been proposed that metal-free 5a,6-anhydrotetracycline acts via an exceptional, conformationally different induction mode that circumvents the normal magnesium requirement. We have tested this hypothesis by determining crystal structures of TetR-5a,6-anhydrotetracycline complexes in the presence of magnesium, ethylenediaminetetraacetic acid, or high concentrations of potassium. Analysis of these three structures reveals that, irrespective of the metal, the effects of 5a,6-anhydrotetracycline binding are indistinguishable from those of canonical induction by other tetracyclines. Together with a close scrutiny of the earlier evidence of a metal-triggered mechanism, these results demonstrate that magnesium recognition per se is not a prerequisite for tetracycline repressor allostery.

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